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Paper · arXiv

SelectPFN: Amortized Bayesian Variable Selection for Sparse Nonlinear Regression with Prior-Data Fitted Networks

Tabular foundation models based on prior-data fitted networks (PFNs) predict on a new data set in a single forward pass, but they cannot report which inputs their predictions depend on. We propose SelectPFN, a PFN that performs Bayesian variable selection and prediction jointly for sparse nonlinear regression. In one forward pass it returns posterior inclusion probabilities for every variable, and its predictions are computed from sampled subsets only, so excluded variables provably cannot affect them; we show this is exactly what the Bayesian model prescribes. The network is pretrained once on synthetic tasks from a meta-prior built around a group spike-and-slab sparse-input neural netwo...

AuthorsBin Luo
Primary categorystat.ML
Published15 October 2026
Last updated at source15 October 2026
stat.MLcs.LG
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