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Paper · arXiv

UMCR: Universal Medical Concept Recognition through Guideline Integration and Agentic Linking

Medical Concept Recognition is the task of extracting and grounding spans in medical text to entries in a standard ontology. Current methods are generally developed towards a single ontology and source text type (clinical notes, drug labels, etc.) The central challenge is therefore to build methods that adapt to any target ontology without requiring ontology-specific retraining. More recent approaches like REAL and AutoPCR make direct use of Large Language Models and can theoretically adapt to any ontology choice but suffer from a lack of generalization. We propose UMCR, a pipeline that allows extraction and linking to any target ontology using any source text variety, utilizing direct gu...

AuthorsFabrice Lamarche, Amal Zouaq
Primary categorycs.CL
Published12 October 2026
Last updated at source12 October 2026
cs.CL
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