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Does Learning Protein Folding Generalize to Broader Reasoning?

Large language models rely heavily on human text, which often conveys surface answers rather than the spatial and structural logic behind them. Protein folding is a natural testbed, because one solved structure yields thousands of exactly checkable spatial and topological statements. We ask: can learning to fold proteins teach general models reusable reasoning capabilities? To answer this, we build FoldingCorpus, a protein-derived question-answer dataset, and Fold2Reason, a recipe that post-trains on it through two complementary signals: discrete structural answers predicted via the model's native language head, and continuous 3D geometry decoded from the same shared representations. On F...

AuthorsYong Liu, Zhanpeng Shi, Yizhou Dang et al.
Primary categorycs.LG
Published30 September 2026
Last updated at source30 September 2026
cs.LGcs.AI
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