Not All Nodes Are Created Equal: Homophily-Aware Stratification for Stable GNN Evaluation
Graph neural networks are widely used for transductive node classification, with accuracy typically measured on randomly drawn train/validation/test splits. Reported accuracy has been shown to shift substantially across different random splits of the same dataset, making published comparisons between architectures unreliable. The classical remedy in non-graph settings is stratified $k$-fold cross-validation, which ensures each test fold reflects the full class distribution of the dataset. We argue that class stratification alone is insufficient for graphs: nodes are not isolated but connected, and folds that differ in their distribution of local neighbourhood homophily expose the model to...
| Authors | Naga Venkata Sai Jitin Jami, Thomas Altstidl, Sebastian Hoefler et al. |
|---|---|
| Primary category | cs.SI |
| Published | 16 September 2026 |
| Last updated at source | 16 September 2026 |
Silytics shows public metadata from arXiv and links to the original. Information may be incomplete or out of date. Last refreshed 17 October 2026. Licenses and terms of the original apply to the work itself. Not financial, legal or professional advice.