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Paper · arXiv

Language-Informed Flow Matching for Trend-Guided Structure-Based 3D Molecular Generation

Structure-based drug design (SBDD) requires ligands that satisfy both 3D target affinity and 1D chemical validity. Existing controllable generation methods often rely on task-specific fine-tuning or externally imposed sampling-time guidance, adding cost and potentially conflicting with evolving 3D geometric constraints. We propose LiFT, a language-informed cross-modal framework built on Flow Matching for trend-guided 3D molecular generation across both de novo design and scaffold hopping. LiFT uses a "Sense-Evolve-Assemble" agent to generate target-aware SMILES as intermediate chemical conditions, from which a pre-trained chemical foundation model extracts continuous semantic priors. Thes...

AuthorsTianyu Gao, Zhikai Su, Jiashu Li et al.
Primary categorycs.LG
Published31 August 2026
Last updated at source31 August 2026
cs.LG
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