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Paper · arXiv

CoMPASS: Collaborative Molecular Property Prediction via Adaptive Small-Large Model Synergy

Accurate molecular property prediction requires both statistical reliability and chemical reasoning. Graph neural networks can be calibrated directly on labeled assays but remain limited by the coverage of their training data. Large language models (LLMs) can compare molecular evidence and articulate chemical rationales, yet are unreliable as standalone quantitative predictors. The central challenge is therefore to determine when an LLM should influence a calibrated model and by how much. Here we present CoMPASS, a retrieval-calibrated framework for small-large model collaboration. CoMPASS retains a graph attention network (GAT) as the predictive anchor, retrieves locally relevant trainin...

AuthorsWentao Li, Jiangjie Qiu, Yijun Li et al.
Primary categorycs.LG
Published31 August 2026
Last updated at source31 August 2026
cs.LGcs.AI
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