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Paper · arXiv

MolEmb: Multimodal Large Language Models Can Be Strong Molecular Embedding Models

Molecular embedding models can serve as foundational infrastructure for computational chemistry and drug discovery, where reusable vector representations support property prediction, virtual screening, and retrieval. Most molecular encoders are specialist models built around a single molecular view, producing unconditional vectors with no language interface for varying the representation. We ask whether multimodal large language models (MLLMs), which natively process images, text, and symbolic inputs, can instead serve as \emph{general molecular embedding models} that produce embeddings conditioned on both a molecular profile and a natural-language semantic context. We introduce \textbf{M...

AuthorsXinjian Zhao, Xiangru Jian, Yaoyao Xu et al.
Primary categorycs.AI
Published24 August 2026
Last updated at source24 August 2026
cs.AIcs.LG
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