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Paper · arXiv

How Much Does Message Passing Matter? A Drop-In Study of GNN Layers for Neural Network Graph Regression

Graph Neural Networks (GNNs) are widely used as regressors, for example to predict the accuracy of a neural architecture. Yet new message-passing (MP) layers are developed and benchmarked almost exclusively on classification tasks, and regression pipelines typically adopt a single MP layer without ablation. We ask how much the choice of MP layer matters for graph-level regression. Holding the architecture, loss and training recipe of four existing GNN regressors fixed, we substitute ten MP configurations spanning convolutional, isomorphism-based and attention-based designs. We evaluate them on eleven datasets of neural-network graphs that range from under ten to over a thousand nodes per ...

AuthorsKeith G. Mills, Aedan J. DeFrates, Joong Ho Kim
Primary categorycs.LG
Published29 July 2026
Last updated at source8 October 2026
cs.LG
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