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Paper · arXiv

scMIR: a vision-language foundation model for single-cell light microscopy image representation

Single-cell light microscopy images have become an important data source for characterizing cell phenotypes, but their complexity and heterogeneity pose challenges to high-throughput automated analysis. Existing representation learning methods mostly rely on task-oriented modeling, which is limited by specific datasets and predefined tasks, making them difficult to generalize across different cell types and microscopy modalities, and experimental conditions. Although general-purpose methods have improved the generalization ability of image representation in recent years, their limited utilization of experimental background and biological context information still poses challenges in compl...

AuthorsYifan Shang, Jiahui Tan, Xiangxiang Zeng et al.
Primary categorycs.CV
Published21 July 2026
Last updated at source28 July 2026
cs.CVcs.AIphysics.optics
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