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Paper · arXiv

Contrastive Joint-Embedding Prediction for Representation Learning in Structural MRI

Self-supervised learning offers a compelling approach for medical imaging, where labeled data are scarce and acquisition costs are high. We present COJEPA, a self-supervised framework for volumetric brain MRI that combines a joint-embedding predictive architecture (JEPA) with a contrastive loss (CO), targeting two complementary properties: local predictivity and global discriminability. The model is trained without labels on T1-weighted structural MRI from two cohorts (HCP-YA and AABC, $N{=}2286$, ages 22 to 90), extending I-JEPA to 3D with foreground-aware block masking, a hierarchical convolutional patch embedding, and world-space sinusoidal positional encodings. We evaluate all three o...

AuthorsFabian Mager, Lars Kai Hansen
Primary categorycs.CV
Published12 July 2026
Last updated at source12 July 2026
cs.CVcs.LG
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