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Paper · arXiv

AbICL: In-Context Learning for Antigen-Specific Antibody Affinity Ranking

Accurate ranking of antibody candidates according to their binding affinity is essential for therapeutic antibody discovery. However, existing methods treat affinity comparisons independently and ignore the contextual information encoded in other labeled comparisons, limiting their ability to capture antigen-specific binding landscapes. For many target antigens, a small number of experimentally characterized affinity comparisons are often available. An important question is whether the model can exploit these existing comparisons to infer antigen-specific ranking patterns that facilitate subsequent affinity ranking. This form of learning from labeled demonstrations closely resembles the p...

AuthorsZhiyuan Chen, Jing Hu, Junzhe Wang et al.
Primary categorycs.LG
Published7 July 2026
Last updated at source7 July 2026
cs.LGcs.AIcs.CEq-bio.QM
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