Data-Driven Soft Labeling Scales DNA Read Classification to Whole-Body Cell-Type Deconvolution
Cell-type deconvolution, the task of estimating the proportions of constituent cell types in a heterogeneous biological sample, is a core problem in computational biology. Methods that rely on epigenetic marks such as DNA methylation typically operate on aggregated methylation estimates, discarding the pattern-level information carried by individual DNA reads. Existing read-level approaches that exploit this information are scarce, and all remain restricted to few-class settings; scaling them further is an open problem because, at scale, non-discriminative reads dominate and hard labels conflict with the many-to-many mapping between methylation patterns and cell types, preventing classifi...
| Authors | Dmytro Rizdvanetskyi, Nathan Roos, Pavlo Lutsik |
|---|---|
| Primary category | cs.LG |
| Published | 6 July 2026 |
| Last updated at source | 29 September 2026 |
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