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Paper · arXiv

Mitigating Batch Effects in Histopathology via Language-Mediated Robust Embedding Generation

Pathology foundation models (PFMs) have demonstrated strong potential across clinical and scientific applications, yet their performance is often hindered by batch effects, which are non-biological variations across tissue source institutions (TSIs) that distort learned feature representations and impair generalization. Conventional mitigation strategies, such as stain normalization, offer limited success in addressing these high-dimensional, complex artifacts. We present GLMP (General-purpose LLM-Mediated Pathology model), a novel framework that generates robust numerical embeddings from histology image patches through an intermediate textual representation. By leveraging pretrained gene...

AuthorsYishu Zhang, Shushan Wu, Zhenzhong Zhang et al.
Primary categorycs.CV
Published27 June 2026
Last updated at source27 June 2026
cs.CVcs.CL
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