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Paper · arXiv

Target-Aware Bandit Allocation for Scalable Surrogate Optimization in Chemical Space

Identifying high-utility candidates from massive discrete spaces under expensive evaluations is a recurring challenge across the sciences, with structure-based drug discovery as a prominent example. While surrogate-based optimization can increase sample efficiency by reducing the number of expensive evaluations, modern molecular libraries have reached billions to trillions of compounds, making full-library surrogate inference itself a major computational bottleneck. We introduce BOBa, a bandit-guided surrogate optimization framework that eliminates full-library inference by adaptively allocating computation across partitions of the action space. By treating partitions as arms in a multi-a...

AuthorsMohammad Haddadnia, Yuvan Chali, Abhilash Jayaraj et al.
Primary categorycs.LG
Published25 June 2026
Last updated at source25 June 2026
cs.LG
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