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Paper · arXiv

Representation-Guided Discrete Molecular Graph Retrosynthesis

Stochastic process-based molecular graph generators have become the state of the art for template-free single-step retrosynthesis. However, these models are typically trained only on product-reactant pairs, thereby acquiring chemistry-relevant representations in an indirect and implicit manner. Meanwhile, recent advances in computer vision demonstrate that offering representation guidance to a generator can effectively distill semantics from pretrained encoders into DiTs, substantially improving both convergence and generation quality. Whether similar gains extend to the retrosynthesis task, and what graph-specific design choices can make them work, remains an open question. To address th...

AuthorsJiahai Huang, Anjie Qiao, Zhen Wang et al.
Primary categorycs.LG
Published23 May 2026
Last updated at source23 May 2026
cs.LG
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