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Paper · arXiv

A Comparative Study of QSPR Methods on a Unique Multitask PAMPA dataset

We present a unique, multitask dataset comprising 143 drug and drug candidate molecules, each evaluated on in vitro, parallel artificial-membrane permeability assays (PAMPA) using six different model membranes. Using this resource, we systematically assess the effectiveness of various molecular descriptors and regression models in predicting passive membrane permeability. The studied models range from simple linear regression to a modern pre-trained transformer architecture. Particular attention is given to the trade-off between predictive performance and model interpretability, highlighting the challenges introduced by machine learning approaches. To our knowledge, this is the most compr...

AuthorsAndrs Formanek, Anna Vincze, Richrd Bicsak et al.
Primary categorycs.LG
Published1 May 2026
Last updated at source1 May 2026
cs.LG
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