Polyformer: a generative framework for thermodynamic modeling of polymeric molecules
The classic paradigm of structural biology is that the sequence of a biomolecule (protein, nucleic acid, lipid, etc) determines its conformation (shape) which determines its biological function. Protein folding programs like AlphaFold address this paradigm by predicting the single best conformation given a sequence that defines the molecule. However, biomolecules are not static structures, and their conformational ensemble determines their function. We present the Polyformer -- a generative framework for thermodynamic modeling of polymeric molecules. Given the sequence and temperature (or another thermodynamic variable), the Polyformer generates conformations faithful to the molecule's th...
| Authors | Alessio Valentini, David Pekker, Chungwen Liang et al. |
|---|---|
| Primary category | q-bio.BM |
| Published | 15 April 2026 |
| Last updated at source | 3 May 2026 |
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