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Paper · arXiv

In-Context Molecular Property Prediction with LLMs: A Blinding Study on Memorization and Knowledge Conflicts

The capabilities of large language models (LLMs) have expanded beyond natural language processing to scientific prediction tasks, including molecular property prediction. However, their effectiveness in in-context learning remains ambiguous, particularly given the potential for training data contamination in widely used benchmarks. This paper investigates whether LLMs perform genuine in-context regression on molecular properties or instead rely on verbatim retrieval of memorized target values. Furthermore, we analyze the interplay between pre-trained knowledge and in-context information through a series of progressively blinded experiments. We evaluate nine LLM variants across three famil...

AuthorsMatthias Busch, Marius Tacke, Sviatlana V. Lamaka et al.
Primary categorycs.LG
Published26 March 2026
Last updated at source4 August 2026
cs.LG
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