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Paper · arXiv

Protein Design with Agent Rosetta: A Case Study for Specialized Scientific Agents

Large language models (LLMs) are capable of emulating reasoning and using tools, creating opportunities for autonomous agents that execute complex scientific tasks. Protein design provides a natural testbed: although machine learning (ML) methods achieve strong results, these are largely restricted to canonical amino acids and narrow objectives, leaving unfilled need for a generalist tool for broad design pipelines. We introduce Agent Rosetta, an LLM agent paired with a structured environment for operating Rosetta, the leading physics-based heteropolymer design software, capable of modeling non-canonical building blocks and geometries. Agent Rosetta iteratively refines designs to achieve ...

AuthorsJacopo Teneggi, S. M. Bargeen A. Turzo, Tanya Marwah et al.
Primary categorycs.AI
Published16 March 2026
Last updated at source15 June 2026
cs.AI
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