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Paper · arXiv

Adversarial Batch Representation Augmentation for Batch Correction in High-Content Cellular Screening

High-Content Screening routinely generates massive volumes of cell painting images for phenotypic profiling. However, technical variations across experimental executions inevitably induce biological batch (bio-batch) effects. These cause covariate shifts and degrade the generalization of deep learning models on unseen data. Existing batch correction methods typically rely on additional prior knowledge (e.g., treatment or cell culture information) or struggle to generalize to unseen bio-batches. In this work, we frame bio-batch mitigation as a Domain Generalization (DG) problem and propose Adversarial Batch Representation Augmentation (ABRA). ABRA explicitly models batch-wise statistical f...

AuthorsLei Tong, Xujing Yao, Adam Corrigan et al.
Primary categorycs.CV
Published5 March 2026
Last updated at source5 March 2026
cs.CVcs.AI
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