weililab/perturbation-embeddings

Gene embeddings for perturbation modeling This repository distributes seven gene/protein representation tables in a common NumPy/JSON format for use with pertTF and other perturbation models. The STRING, ESM2, GenePT and GEARS tables are embedding features. The CRISPR score tables contain measured GeneEffect profiles across cell lines, used as gene features. None of these tables contains pertTF-generated predictions. The original embedding models were not trained by this… See the full description on the dataset page: https://huggingface.co/datasets/weililab/perturbation-embeddings.

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