tomaarsen/mammal-entity-retrieval-eval

MAMMAL entity-retrieval evaluation Evaluation of ibm-research/biomed.omics.bl.sm.ma-ted-458m (IBM MAMMAL, T5 encoder-decoder 458M) as an embedding/retrieval model over its native modalities — protein sequences and SMILES molecules. Embeddings are mean-pooled T5-encoder hidden states from the model's own modular-tokenizer entity prompts. Two models are reported: the zero-shot base checkpoint, and a contrastively aligned finetune (tomaarsen/biomed-mammal-ted-458m-dti-contrastive)… See the full description on the dataset page: https://huggingface.co/datasets/tomaarsen/mammal-entity-retrieval-eval

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