Dataset · Hugging Face

timodonnell/protein-docs

Name: protein-docs
Creator: timodonnell
License: cc-by-4.0
Keywords: task_categories:text-generation, language:en, license:cc-by-4.0, size_categories:10M<n<100M, format:parquet, modality:tabular, modality:text, library:datasets, library:dask, library:polars, library:mlcroissant, region:us, protein-structure, alphafold, contact-map

Protein Documents (Parquet) Structured text documents encoding protein residue sequences and 3D contact maps from AlphaFold Database v4 predicted structures, stored as Parquet files. Each row is one protein document with metadata. Source structures: timodonnell/afdb-24M and timodonnell/afdb-1.6M Document Schemes Each subdirectory contains documents generated with a different scheme. All schemes share leakage-resistant train/val/test splits based on structural… See the full description on the dataset page: https://huggingface.co/datasets/timodonnell/protein-docs.

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Author / organization	timodonnell
License (as declared)	cc-by-4.0
Downloads	2K (as reported by Hugging Face)
Likes	0
Created	12 March 2026
Last updated at source	8 June 2026

protein-structurealphafoldcontact-mapstructural-biologyprotein-language-model

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