Dataset · Hugging Face

ratschlab/TCGA_virtual_spatial_transcriptomics_atlas

Name: TCGA_virtual_spatial_transcriptomics_atlas
Creator: ratschlab
License: cc-by-nc-sa-4.0
Keywords: language:en, license:cc-by-nc-sa-4.0, size_categories:10K<n<100K, modality:text, region:us, spatial-transcriptomics, histology, pathology, transcriptomics, machine-learning, TCGA, gene-expression, computational-pathology, whole-slide-imaging, virtual-spatial-transcriptomics

TCGA virtual spatial transcriptomics atlas This repository contains predicted spatial transcriptomics for TCGA H&E slides, both fresh-frozen (FF) and formalin-fixed paraffin-embedded (FFPE), produced with DeepSpot-M. Authors: Kalin Nonchev, Sebastian Dawo, Karina Silina, Viktor Hendrik Koelzer, and Gunnar Rätsch. Model: ratschlab/DeepSpotM · Code: github.com/ratschlab/DeepSpotM · Paper: medRxiv 2026.06.19.26356060. News [09.2026] Introducing Aurora - a no-code… See the full description on the dataset page: https://huggingface.co/datasets/ratschlab/TCGA_virtual_spatial_transcriptomics_atlas.

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Author / organization	ratschlab
License (as declared)	cc-by-nc-sa-4.0
Downloads	624 (as reported by Hugging Face)
Likes	25
Created	12 June 2026
Last updated at source	13 August 2026

spatial-transcriptomicshistologypathologytranscriptomicsmachine-learningTCGAgene-expressioncomputational-pathologywhole-slide-imagingvirtual-spatial-transcriptomicsfoundation-modelcanceroncologydeep-learning

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