dn-gh/terra-cosmx-crc-perturbation
TERRA-112M in-silico gene knockouts on CosMx colorectal cancer sections TERRA-112M (terra-st 0.1.13) in-silico knockouts on 9 CosMx sections (222, 110, 120, 210, 221, 231, 232, 242, 241) from Crowell/Heyn et al., bioRxiv 10.1101/2025.06.23.660674. Knocked-out genes: CA9, DPEP1, SLCO1B3, GJB4, LGR5, MMP7, FAP. Negative controls: HPRT1, PPIA, TBP. Each gene was knocked out in two ways: cell: the gene token is removed from the cell's own segment; neighborhood: it is removed from… See the full description on the dataset page: https://huggingface.co/datasets/dn-gh/terra-cosmx-crc-perturbation.
| Author / organization | dn-gh |
|---|---|
| License (as declared) | other |
| Downloads | 0 (as reported by Hugging Face) |
| Likes | 0 |
| Created | 16 October 2026 |
| Last updated at source | 16 October 2026 |
Recent changes
- 16 Oct 2026 License: none → other
- 16 Oct 2026 Description: none → TERRA-112M in-silico gene knockouts on CosMx colorectal cancer sections TERRA-112M (terra-st 0.1.13) in-silico knockouts on 9 CosMx sections (222, 110, 120, 210, 221, 231, 232, 242, 241) from Crowell/Heyn et al., bioRxiv 10.1101/2025.06.23.
- 16 Oct 2026 Topics added spatial-transcriptomics, cosmx, colorectal-cancer, in-silico-perturbation, anndata, terra
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