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MedOtter/MitoEM

MitoEM (publicly-labeled half) MitoEM — A Large-scale 3D Mitochondria Instance Segmentation Dataset from Electron Microscopy (Wei et al., MICCAI 2020). Two (30 µm)³ tissue blocks imaged by serial-section multi-beam SEM (ssSEM) at 8 × 8 × 30 nm, one from rat and one from human cortex, densely annotated for mitochondria instances. This mirror = the 500 publicly-labeled slices per subset (z 0–499). Each source volume is 1000 × 4096 × 4096 voxels, but only the first half carries… See the full description on the dataset page: https://huggingface.co/datasets/MedOtter/MitoEM.

Author / organizationMedOtter
License (as declared)mit
Downloads698 (as reported by Hugging Face)
Likes0
Created4 August 2026
Last updated at source28 August 2026
medicalbiomedicalelectron-microscopyssemconnectomicsmitochondriainstance-segmentation3d-segmentationbraincortexmiccaimitoem
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