Dataset · Hugging Face

MahmoodLab/hest

Name: hest
Creator: MahmoodLab
License: cc-by-nc-sa-4.0
Keywords: task_categories:image-classification, task_categories:feature-extraction, task_categories:image-segmentation, language:en, license:cc-by-nc-sa-4.0, size_categories:100B<n<1T, arxiv:2406.16192, region:us, spatial-transcriptomics, histology, pathology

Model Card for HEST-1k What is HEST-1k? A collection of 1,276 spatial transcriptomic profiles, each linked and aligned to a Whole Slide Image (with pixel size < 1.15 µm/px) and metadata. HEST-1k was assembled from 180 public and internal cohorts encompassing: 26 organs 2 species (Homo Sapiens and Mus Musculus) 398 cancer samples from 25 cancer types. HEST-1k processing enabled the identification of >1.5 million expression/morphology pairs and >76 million nuclei… See the full description on the dataset page: https://huggingface.co/datasets/MahmoodLab/hest.

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Author / organization	MahmoodLab
License (as declared)	cc-by-nc-sa-4.0
Downloads	36.3K (as reported by Hugging Face)
Likes	120
Created	13 June 2024
Last updated at source	8 February 2026

spatial-transcriptomicshistologypathology

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