Dataset · Hugging Face

Gaolaboratory/MSConsensus-100M

Name: MSConsensus-100M
Creator: Gaolaboratory
License: cc-by-4.0
Keywords: task_categories:feature-extraction, task_categories:other, annotations_creators:machine-generated, source_datasets:PRIDE, language:en, license:cc-by-4.0, size_categories:100M<n<1B, format:parquet, modality:text, modality:timeseries, library:datasets, library:dask, library:polars, library:mlcroissant, region:us

MSConsensus A hundred-million-scale, batch-effect-suppressed dataset and benchmark for proteomics machine learning. MSConsensus holds 110,209,043 consensus MS/MS spectra. They were built from 1.01 PB of public raw mass-spectrometry data taken from 1,500 PRIDE repositories and covering all major Orbitrap and timsTOF platforms. A new consensus algorithm, Weighted-Score Binning (WSBIN), produces several consensus spectra per precursor instead of one representative spectrum. This… See the full description on the dataset page: https://huggingface.co/datasets/Gaolaboratory/MSConsensus-100M.

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Author / organization	Gaolaboratory
License (as declared)	cc-by-4.0
Downloads	180 (as reported by Hugging Face)
Likes	0
Created	2 September 2026
Last updated at source	23 September 2026

proteomicsmass-spectrometrytandem-mass-spectrometryms-mspeptide-identificationde-novo-peptide-sequencingfragment-intensity-predictionspectral-embeddingbatch-effectconsensus-spectrabiologybenchmark

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