Dataset · Hugging Face

Aignostics/OpenTME

Name: OpenTME
Creator: Aignostics
License: other
Keywords: task_categories:image-classification, task_categories:image-segmentation, task_categories:image-feature-extraction, task_categories:object-detection, license:other, size_categories:10K<n<100K, format:imagefolder, modality:image, library:datasets, library:mlcroissant, arxiv:2604.12075, region:us, biomarker-discovery, biology, bladder-cancer

OpenTME: Open-Access Tumor Microenvironment Profiles from TCGA OpenTME is an open-access project by Aignostics for academic researchers. It provides comprehensive spatial outputs for whole slide images (WSIs) of H&E-stained, formalin-fixed, paraffin-embedded slides from The Cancer Genome Atlas (TCGA). OpenTME is powered by Atlas H&E-TME – a computational pathology application developed by Aignostics. Atlas H&E-TME Atlas H&E-TME is a foundation model-based… See the full description on the dataset page: https://huggingface.co/datasets/Aignostics/OpenTME.

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Author / organization	Aignostics
License (as declared)	other
Downloads	359 (as reported by Hugging Face)
Likes	45
Created	9 March 2026
Last updated at source	25 September 2026

biomarker-discoverybiologybladder-cancerbreast-cancercancercell-segmentationcolorectal-cancercomputational-pathologydigital-pathologyH&Eliver-cancerlung-canceroncologypancreatic-cancerpathologyprostate-cancerspatial-biologystomach-cancerTCGAtertiary-lymphoid-structurestissue-segmentationtumor-microenvironmentwhole-slide-imagingwhole-tumor-region

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